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scoring matrix

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  • Position-specific scoring matrix — A position weight matrix (PWM), also called position specific weight matrix (PSWM) or position specific scoring matrix (PSSM), is a commonly used representation of motifs (patterns) in biological sequences.cite journal |author=Ben Gal I, Shani A …   Wikipedia

  • Matrix — Contents 1 Science and mathematics 2 Technology 3 Arts and entertainment …   Wikipedia

  • Matrix (biology) — In biology, matrix (plural: matrices) is the material (or tissue) between animal or plant cells, in which more specialized structures are embedded, and a specific part of the mitochondrion that is the site of oxidation of organic molecules. The… …   Wikipedia

  • Scoring algorithm — In statistics, Fisher s Scoring algorithm is a form of Newton s method used to solve maximum likelihood equations numerically.ketch of DerivationLet Y 1,ldots,Y n be random variables, independent and identically distributed with twice… …   Wikipedia

  • The Matrix Reloaded — For the franchise, see The Matrix (franchise). The Matrix Reloaded Theatrical poster featuring Neo and Trinity Directed by Andy Wachowski Larry Wachowski …   Wikipedia

  • Blocks Substitution Matrix — Die BLOSUM62 Matrix BLOSUM (BLOcks SUbstitution Matrix[1]) ist eine evidenzbasierte Substitutionsmatrix, die für Sequenzalignment von Proteinen benutzt wird und spielt neben der Point Accepted Mutation Matrix (PAM Matrix) eine wichtige Rolle in… …   Deutsch Wikipedia

  • Wessex Head Injury Matrix — Die Wessex Head Injury Matrix (WHIM) ist ein englischsprachiger neuropsychologischer Score zur Beurteilung von Patienten, die aus einem Koma erwachen, und von Patienten in vegetativen (vegetative state, Wachkoma, apallisches Syndrom) und minimal… …   Deutsch Wikipedia

  • Sequence alignment — In bioinformatics, a sequence alignment is a way of arranging the sequences of DNA, RNA, or protein to identify regions of similarity that may be a consequence of functional, structural, or evolutionary relationships between the sequences.[1]… …   Wikipedia

  • Multiple sequence alignment — A multiple sequence alignment (MSA) is a sequence alignment of three or more biological sequences, generally protein, DNA, or RNA. In many cases, the input set of query sequences are assumed to have an evolutionary relationship by which they… …   Wikipedia

  • BLAST — Infobox Software name=BLAST developer=Myers, E., Altschul S.F., Gish W., Miller E.W., Lipman D.J., NCBI latest release version=2.2.18 operating system=UNIX, Linux, Mac, MS Windows genre=Bioinformatics tool license=Public Domain website=… …   Wikipedia

  • Smith-Waterman algorithm — The Smith Waterman algorithm is a well known algorithm for performing local sequence alignment; that is, for determining similar regions between two nucleotide or protein sequences. Instead of looking at the total sequence, the Smith Waterman… …   Wikipedia


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